Soutenance de thèse de Asma TIMOUMI

Dynamique de réponses physiologique et métabolique de Yarrowia lipolytica à des perturbations environnementales physico-chimiques.


Titre anglais : Study of the dynamics of physiological and metabolic responses of Yarrowia lipolytica to environmental physico-chemical perturbations
Ecole Doctorale : SEVAB - Sciences Ecologiques, Vétérinaires, Agronomiques et Bioingenieries
Spécialité : Ingénieries microbienne et enzymatique
Etablissement : Institut National des Sciences Appliquées de Toulouse
Unité de recherche : UMR 5504 - TBI - Toulouse Biotechnology Institute, Bio & Chemical Engineering


Cette soutenance a eu lieu jeudi 29 juin 2017 à 10h00
Adresse de la soutenance : Institut National des Sciences Appliquées - 135, Avenue de Rangueil, 31077 Toulouse Cedex 4, France - salle Salle des theses

devant le jury composé de :
Luc FILLAUDEAU   Directeur de recherche   Institut National de Recherche Agronomique INRA   Directeur de thèse
Hela KALLEL   Professeur   Institut Pasteur de Tunis   Rapporteur
Jack LEGRAND   Professeur des universités   GEPEA, Université de Nantes   Rapporteur
Carole MOLINA-JOUVE   Professeur des universités   Institut National des Sciences Appliquées INSA   CoDirecteur de thèse
Nathalie GORRET   Chargé de recherche   Institut National de Recherche Agronomique INRA   CoDirecteur de thèse
Yohan ALLOUCHE   Ingénieur de recherche   Airbus Group   Examinateur


Résumé de la thèse en français :  

Due to limited mixing capacities, heterogeneities regularly occur when scaling-up bioreactors
for large-scale production. Microbial cultures are continuously exposed to local gradients in
fundamental process parameters such as substrate, pH, temperature and dissolved oxygen DO
concentration. These micro-environmental fluctuations may have detrimental effects on
cellular growth, metabolism and morphology, depending on the nature, intensity, duration
and/or frequency of the fluctuations encountered. The aim of this study was to investigate the
impact of pH and DO fluctuations on the dynamic behavior of Yarrowia lipolytica, a
microorganism with a promising biotechnological potential, at both morphological and
metabolic levels. For this purpose, batch and continuous cultivations modes were
preferentially adopted, as it enabled respectively, the study of the stress response of yeast
populations growing at their maximum specific rate, and at various controlled specific growth
rates in physiological steady-states. In addition, an important effort was devoted to the
development and validation of morphological methods in order to acquire quantitative
characterization of the response dynamics at the population scale. The macroscopic behavior
of Y. lipolytica was assessed through examining the patterns of growth, viability, glucose
uptake, oxygen consumption, organic acid and carbon dioxide production rates. Changes in
the yeast morphology were characterized at the cell population level by means of flow
cytometry, morphogranulometry and diffraction light scattering techniques. The results
reflected no significant effect of pH and DO fluctuations on the macroscopic behavior
(specific rates, yields, viability) of the yeast. Nevertheless, mycelial growth was induced upon
exposure to both stressors, only in glucose-excess environments, suggesting therefore an
impact of glucose levels on the regulation of dimorphic transition in Y. lipolytica. Controlling
residual glucose concentrations in Y. lipolytica fermentations may contribute to a better
monitoring of its morphological changes in response to environmental stimuli. Such data
would help to optimize bioprocess performances at the industrial scale since it alleviates
physico-chemical impacts due to filamentous cells.

 
Résumé de la thèse en anglais:  

Due to limited mixing capacities, heterogeneities regularly occur when scaling-up bioreactors
for large-scale production. Microbial cultures are continuously exposed to local gradients in
fundamental process parameters such as substrate, pH, temperature and dissolved oxygen DO
concentration. These micro-environmental fluctuations may have detrimental effects on
cellular growth, metabolism and morphology, depending on the nature, intensity, duration
and/or frequency of the fluctuations encountered. The aim of this study was to investigate the
impact of pH and DO fluctuations on the dynamic behavior of Yarrowia lipolytica, a
microorganism with a promising biotechnological potential, at both morphological and
metabolic levels. For this purpose, batch and continuous cultivations modes were
preferentially adopted, as it enabled respectively, the study of the stress response of yeast
populations growing at their maximum specific rate, and at various controlled specific growth
rates in physiological steady-states. In addition, an important effort was devoted to the
development and validation of morphological methods in order to acquire quantitative
characterization of the response dynamics at the population scale. The macroscopic behavior
of Y. lipolytica was assessed through examining the patterns of growth, viability, glucose
uptake, oxygen consumption, organic acid and carbon dioxide production rates. Changes in
the yeast morphology were characterized at the cell population level by means of flow
cytometry, morphogranulometry and diffraction light scattering techniques. The results
reflected no significant effect of pH and DO fluctuations on the macroscopic behavior
(specific rates, yields, viability) of the yeast. Nevertheless, mycelial growth was induced upon
exposure to both stressors, only in glucose-excess environments, suggesting therefore an
impact of glucose levels on the regulation of dimorphic transition in Y. lipolytica. Controlling
residual glucose concentrations in Y. lipolytica fermentations may contribute to a better
monitoring of its morphological changes in response to environmental stimuli. Such data
would help to optimize bioprocess performances at the industrial scale since it alleviates
physico-chemical impacts due to filamentous cells.

Mots clés en français :Yarrowia lipolytica,Comportement dynamique,Bioréacteurs - Hétérogénéité
Mots clés en anglais :   Yarrowia lipolytica,Dynamic behavior,bioreactor heterogeneity